If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ), 'gf_id' => 'HOM05D000878', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000878' ), 'data_identifier' => 'HOM05D000878', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000878', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '677', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p00090' => 'bna', 'A04p17290' => 'bna', 'A05p18470' => 'bna', 'A06p01110' => 'bna', 'A06p08850' => 'bna', 'A06p20100' => 'bna', 'A06p27190' => 'bna', 'A08p01720' => 'bna', 'Aa31LG10G1910' => 'aar', 'Aa31LG3G17410' => 'aar', 'Aa31LG4G16310' => 'aar', 'Aa31LG7G14060' => 'aar', 'Aa31LG8G2230' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1308' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.194' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1776' => 'aag', 'Actinidia00332' => 'ach', 'Actinidia00333' => 'ach', 'Actinidia02422' => 'ach', 'Actinidia04891' => 'ach', 'Actinidia11943' => 'ach', 'Actinidia12555' => 'ach', 'Actinidia18791' => 'ach', 'Actinidia31606' => 'ach', 'Actinidia35000' => 'ach', 'Actinidia35221' => 'ach', 'Actinidia36398' => 'ach', 'Actinidia37625' => 'ach', 'Ah.02g113570' => 'amhyb', 'Ah.02g126570' => 'amhyb', 'Ah.03g139210' => 'amhyb', 'Ah.04g164380' => 'amhyb', 'Ah.06g185160' => 'amhyb', 'Ah.07g198130' => 'amhyb', 'Ah.09g232690' => 'amhyb', 'Ah.12g064910' => 'amhyb', 'Ah.14g086500' => 'amhyb', 'Ah.15g097120' => 'amhyb', 'AL1G61640' => 'aly', 'AL3G27360' => 'aly', 'AL4G12310' => 'aly', 'AL5G26750' => 'aly', 'AL6G20090' => 'aly', 'Aqoxy1G03210' => 'aox', 'Aqoxy3G03394' => 'aox', 'Aqoxy4G00476' => 'aox', 'Aqoxy5G01880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3DBG0K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.3PZ9K2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.76IQRR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9BBP6D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CAJ078' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ETNK13' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.IW3W3Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JDV80H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P40JSH' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VHV9MM' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YR1LBG' => 'arhy', 'AT1G53240' => 'ath', 'AT2G22780' => 'ath', 'AT3G15020' => 'ath', 'AT3G47520' => 'ath', 'AT3G53910' => 'ath', 'AT5G09660' => 'ath', 'ATR0564G247' => 'atr', 'ATR0602G293' => 'atr', 'ATR0626G197' => 'atr', 'ATR0767G223' => 'atr', 'Atru.chr10.1706' => 'acertr', 'Atru.chr2.2245' => 'acertr', 'Atru.chr3.1100' => 'acertr', 'AUR62003139' => 'cqu', 'AUR62007959' => 'cqu', 'AUR62008422' => 'cqu', 'AUR62014203' => 'cqu', 'AUR62019540' => 'cqu', 'AUR62021673' => 'cqu', 'AUR62027526' => 'cqu', 'AUR62030224' => 'cqu', 'AUR62036097' => 'cqu', 'BcaB01g00909' => 'bca', 'BcaB01g01549' => 'bca', 'BcaB02g10697' => 'bca', 'BcaB02g10943' => 'bca', 'BcaB03g14358' => 'bca', 'BcaB04g17101' => 'bca', 'BcaB05g21540' => 'bca', 'BcaB06g27831' => 'bca', 'BcaB07g33344' => 'bca', 'BcaB08g37152' => 'bca', 'BcaC01g00845' => 'bca', 'BcaC01g01371' => 'bca', 'BcaC01g01807' => 'bca', 'BcaC01g02279' => 'bca', 'BcaC01g04806' => 'bca', 'BcaC02g08604' => 'bca', 'BcaC03g13268' => 'bca', 'BcaC05g25153' => 'bca', 'BcaC07g39306' => 'bca', 'BcaC08g43513' => 'bca', 'BcaC08g44064' => 'bca', 'BcaC08g44067' => 'bca', 'BolC2t06361H' => 'bol', 'BolC3t15678H' => 'bol', 'BolC3t18983H' => 'bol', 'BolC3t19462H' => 'bol', 'BolC3t20803H' => 'bol', 'BolC3t21444H' => 'bol', 'BolC4t26784H' => 'bol', 'BolC5t29793H' => 'bol', 'BolC6t35979H' => 'bol', 'BolC6t36642H' => 'bol', 'BolC6t36644H' => 'bol', 'BolC7t42893H' => 'bol', 'BraA02t04994Z' => 'bra', 'BraA04t17357Z' => 'bra', 'BraA05t20739Z' => 'bra', 'BraA06t23338Z' => 'bra', 'BraA06t24080Z' => 'bra', 'BraA06t25096Z' => 'bra', 'BraA06t25661Z' => 'bra', 'BraA06t25662Z' => 'bra', 'BraA08t32225Z' => 'bra', 'C02p03990' => 'bna', 'C03p33590' => 'bna', 'C03p67090' => 'bna', 'C03p71710' => 'bna', 'C03p85140' => 'bna', 'C03p91080' => 'bna', 'C03p91280' => 'bna', 'C04p52100' => 'bna', 'C05p10480' => 'bna', 'C06p09010' => 'bna', 'C06p14610' => 'bna', 'C06p14630' => 'bna', 'C07p23620' => 'bna', 'C09p67810' => 'bna', 'CAN.G133.12' => 'can', 'CAN.G162.21' => 'can', 'CAN.G252.2' => 'can', 'CAN.G292.7' => 'can', 'CAN.G504.66' => 'can', 'CAN.G812.41' => 'can', 'CAN.G837.24' => 'can', 'CANSAT01G2204' => 'cansat', 'CANSAT25G2488' => 'cansat', 'CANSAT35G0995' => 'cansat', 'CANSAT78G0835' => 'cansat', 'CARHR043460' => 'chi', 'CARHR089980' => 'chi', 'CARHR114060' => 'chi', 'CARHR156160' => 'chi', 'CARHR203730' => 'chi', 'Carub.0001s4242' => 'cru', 'Carub.0003s2759' => 'cru', 'Carub.0004s0191' => 'cru', 'Carub.0005s1361' => 'cru', 'Ca_18424_v3' => 'car', 'Ca_18439_v3' => 'car', 'Ca_21819_v3' => 'car', 'Ca_23060_v3' => 'car', 'Ca_24658_v3' => 'car', 'Ca_24659_v3' => 'car', 'CBR_g1023' => 'cbr', 'CBR_g11149' => 'cbr', 'CBR_g12837' => 'cbr', 'CBR_g34334' => 'cbr', 'Cc02_g12950' => 'ccan', 'Cc02_g20400' => 'ccan', 'Cc02_g32320' => 'ccan', 'Cc04_g16570' => 'ccan', 'Cc05_g11390' => 'ccan', 'Cc07_g19300' => 'ccan', 'Cc09_g09050' => 'ccan', 'CDE04G1097' => 'cde', 'CDE04G1733' => 'cde', 'CDE07G0395' => 'cde', 'CDE08G1275' => 'cde', 'CDE10G0121' => 'cde', 'CDE10G1357' => 'cde', 'Cfa001715' => 'cfa', 'Cfa006805' => 'cfa', 'Cfa018937' => 'cfa', 'Cfa019593' => 'cfa', 'Cfa019821' => 'cfa', 'Cfa027097' => 'cfa', 'Ciclev10008562m.g' => 'ccl', 'Ciclev10016114m.g' => 'ccl', 'Ciclev10020378m.g' => 'ccl', 'Ciclev10025945m.g' => 'ccl', 'Ciclev10028730m.g' => 'ccl', 'CiPaw.07G040500' => 'cil', 'CiPaw.08G147900' => 'cil', 'CiPaw.11G045000' => 'cil', 'CiPaw.11G163200' => 'cil', 'CiPaw.12G114800' => 'cil', 'ClCG01G018000' => 'cla', 'ClCG02G005430' => 'cla', 'ClCG07G009970' => 'cla', 'COL.COLO4_04683' => 'col', 'COL.COLO4_11654' => 'col', 'COL.COLO4_17607' => 'col', 'COL.COLO4_17836' => 'col', 'Cpa.g.sc129.41' => 'cpa', 'Cpa.g.sc131.66' => 'cpa', 'Cpa.g.sc20.65' => 'cpa', 'Cpa.g.sc423.5' => 'cpa', 'Cre03.g194850' => 'cre', 'Cre10.g423250' => 'cre', 'Cre12.g483950' => 'cre', 'CsaV3_1G002350' => 'csa', 'CsaV3_4G008360' => 'csa', 'CsaV3_6G028390' => 'csa', 'CsaV3_6G044520' => 'csa', 'CsaV3_7G028870' => 'csa', 'CsaV3_UNG230060' => 'csa', 'CSS0004025' => 'camsi', 'CSS0004536' => 'camsi', 'CSS0006700' => 'camsi', 'CSS0010136' => 'camsi', 'CSS0014392' => 'camsi', 'CSS0017189' => 'camsi', 'CSS0022423' => 'camsi', 'CSS0026227' => 'camsi', 'CSS0026785' => 'camsi', 'CSS0033057' => 'camsi', 'CSS0033201' => 'camsi', 'CSS0040062' => 'camsi', 'CSS0040190' => 'camsi', 'CSS0040947' => 'camsi', 'CSS0042910' => 'camsi', 'CSS0046481' => 'camsi', 'CSS0046521' => 'camsi', 'CSS0050211' => 'camsi', 'CSS0050326' => 'camsi', 'DCAR_010772' => 'dca', 'DCAR_016565' => 'dca', 'DCAR_019590' => 'dca', 'DCAR_021015' => 'dca', 'DCAR_021923' => 'dca', 'DCAR_026053' => 'dca', 'Dinv04634' => 'din', 'Dinv09498' => 'din', 'Dinv14968' => 'din', 'Dinv16047' => 'din', 'Dinv18346' => 'din', 'Dinv19972' => 'din', 'Dinv23072' => 'din', 'Dinv26984' => 'din', 'Dinv33765' => 'din', 'Dinv38716' => 'din', 'Duzib068G0095' => 'dzi', 'Duzib084G0665' => 'dzi', 'Duzib132G0392' => 'dzi', 'Duzib147G0865' => 'dzi', 'Duzib170G0254' => 'dzi', 'Duzib205G0369' => 'dzi', 'Duzib235G0391' => 'dzi', 'ECA232G2061' => 'eca', 'ECA234G0163' => 'eca', 'ECA240G1512' => 'eca', 'ECA240G4101' => 'eca', 'ECA246G1758' => 'eca', 'ECA247G1529' => 'eca', 'EL10Ac4g08318' => 'bvu', 'EL10Ac5g11025' => 'bvu', 'EL10Ac5g12317' => 'bvu', 'EL10Ac6g14954' => 'bvu', 'EL10Ac8g19741' => 'bvu', 'Eucgr.B00511' => 'egr', 'Eucgr.F01209' => 'egr', 'Eucgr.F03251' => 'egr', 'Eucgr.H02358' => 'egr', 'Eucgr.H02364' => 'egr', 'Eucgr.H02370' => 'egr', 'Eucgr.K02475' => 'egr', 'FAN04G0395' => 'fan', 'FAN08G3464' => 'fan', 'FAN11G1858' => 'fan', 'FAN13G3029' => 'fan', 'FAN15G2072' => 'fan', 'FAN16G1257' => 'fan', 'FAN18G3262' => 'fan', 'FAN19G1810' => 'fan', 'FAN20G2119' => 'fan', 'FAN21G0131' => 'fan', 'FAN23G0381' => 'fan', 'FAN24G0141' => 'fan', 'FAN25G1611' => 'fan', 'FAN27G0849' => 'fan', 'FAN28G0552' => 'fan', 'FvH4_1g18690' => 'fve', 'FvH4_2g02490' => 'fve', 'FvH4_2g02530' => 'fve', 'FvH4_3g18670' => 'fve', 'FvH4_5g14890' => 'fve', 'Glyma.01G197700' => 'gma', 'Glyma.05G026300' => 'gma', 'Glyma.06G231500' => 'gma', 'Glyma.07G185400' => 'gma', 'Glyma.08G063800' => 'gma', 'Glyma.11G043900' => 'gma', 'Glyma.12G159300' => 'gma', 'Glyma.17G100600' => 'gma', 'Gohir.A01G057700' => 'ghi', 'Gohir.A01G179300' => 'ghi', 'Gohir.A02G147700' => 'ghi', 'Gohir.A03G067000' => 'ghi', 'Gohir.A04G038400' => 'ghi', 'Gohir.A07G066200' => 'ghi', 'Gohir.A08G021724' => 'ghi', 'Gohir.A08G021732' => 'ghi', 'Gohir.A11G031601' => 'ghi', 'Gohir.D01G044100' => 'ghi', 'Gohir.D01G170100' => 'ghi', 'Gohir.D03G032700' => 'ghi', 'Gohir.D03G093400' => 'ghi', 'Gohir.D05G344600' => 'ghi', 'Gohir.D07G070700' => 'ghi', 'Gohir.D08G032575' => 'ghi', 'Gohir.D11G035100' => 'ghi', 'Gorai.001G074600' => 'gra', 'Gorai.002G063300' => 'gra', 'Gorai.002G211700' => 'gra', 'Gorai.003G034300' => 'gra', 'Gorai.003G097400' => 'gra', 'Gorai.004G030200' => 'gra', 'Gorai.007G037800' => 'gra', 'Gorai.009G372600' => 'gra', 'GSVIVG01006474001' => 'vvi', 'GSVIVG01007997001' => 'vvi', 'GSVIVG01011422001' => 'vvi', 'GSVIVG01014231001' => 'vvi', 'GSVIVG01021185001' => 'vvi', 'GSVIVG01036965001' => 'vvi', 'HanXRQChr02g0043601' => 'han', 'HanXRQChr09g0270821' => 'han', 'HanXRQChr10g0304821' => 'han', 'HanXRQChr12g0373491' => 'han', 'HanXRQChr12g0377171' => 'han', 'HanXRQChr13g0410501' => 'han', 'HanXRQChr14g0445181' => 'han', 'HanXRQChr16g0500961' => 'han', 'HanXRQChr17g0555251' => 'han', 'HanXRQChr17g0563231' => 'han', 'Haze_03954' => 'cav', 'Haze_07321' => 'cav', 'Haze_09352' => 'cav', 'Haze_27351' => 'cav', 'Hma1.2p1_0416F.1_g148670' => 'hma', 'Hma1.2p1_0435F.1_g152450' => 'hma', 'Hma1.2p1_0580F.1_g182830' => 'hma', 'Hma1.2p1_0679F.1_g202270' => 'hma', 'Hma1.2p1_1204F.1_g266960' => 'hma', 'Hma1.2p1_1936F.1_g308200' => 'hma', 'Hma1.2p1_2516F.1_g323680' => 'hma', 'Hma1.2p1_2925F.1_g330450' => 'hma', 'HPP92_004046' => 'vpl', 'HPP92_004057' => 'vpl', 'HPP92_011250' => 'vpl', 'HPP92_014014' => 'vpl', 'HPP92_016792' => 'vpl', 'HPP92_016832' => 'vpl', 'HPP92_024033' => 'vpl', 'Hund02244' => 'sun', 'Hund02248' => 'sun', 'Hund02647' => 'sun', 'Hund14157' => 'sun', 'Hund16603' => 'sun', 'Lalb_Chr01g0006731' => 'lal', 'Lalb_Chr03g0031071' => 'lal', 'Lalb_Chr05g0213911' => 'lal', 'Lalb_Chr07g0178081' => 'lal', 'Lalb_Chr09g0327061' => 'lal', 'Lalb_Chr13g0303211' => 'lal', 'Lalb_Chr16g0379081' => 'lal', 'Lalb_Chr19g0133911' => 'lal', 'Lj1A833T51' => 'lonja', 'Lj2g0027385' => 'lja', 'Lj3g0000611' => 'lja', 'Lj3g0017702' => 'lja', 'Lj4A170G37' => 'lonja', 'Lj4g0003773' => 'lja', 'Lj4g0005214' => 'lja', 'Lj5A224G45' => 'lonja', 'Lj5P110T53' => 'lonja', 'Lj8A151T52' => 'lonja', 'Lsat_1_v5_gn_3_85260' => 'lsa', 'Lsat_1_v5_gn_4_108821' => 'lsa', 'Lsat_1_v5_gn_5_127301' => 'lsa', 'Lsat_1_v5_gn_9_114521' => 'lsa', 'Lsat_1_v5_gn_9_45660' => 'lsa', 'Manes.03G103200' => 'mes', 'Manes.06G091900' => 'mes', 'Manes.07G049100' => 'mes', 'Manes.10G090601' => 'mes', 'Manes.13G106000' => 'mes', 'Manes.14G078500' => 'mes', 'Manes.15G091900' => 'mes', 'Mapoly0015s0129' => 'mpo', 'Mapoly0068s0019' => 'mpo', 'Mapoly0134s0005' => 'mpo', 'MBI05_g34365_MAGBIO' => 'mbi', 'MBI06_g18012_MAGBIO' => 'mbi', 'MBI09_g34292_MAGBIO' => 'mbi', 'MBI13_g04783_MAGBIO' => 'mbi', 'MBI13_g04784_MAGBIO' => 'mbi', 'MBI15_g36479_MAGBIO' => 'mbi', 'MBI16_g26742_MAGBIO' => 'mbi', 'MBI16_g33606_MAGBIO' => 'mbi', 'MCO07G670' => 'mco', 'MCO09G285' => 'mco', 'MCO14G243' => 'mco', 'MD02G1194500' => 'mdo', 'MD03G1240100' => 'mdo', 'MD05G1112700' => 'mdo', 'MD06G1026000' => 'mdo', 'MD06G1193800' => 'mdo', 'MD08G1194900' => 'mdo', 'MD10G1115300' => 'mdo', 'MD11G1259400' => 'mdo', 'MD13G1268800' => 'mdo', 'MD15G1304800' => 'mdo', 'Medtr2g021700' => 'mtr', 'Medtr2g045010' => 'mtr', 'Medtr4g033285' => 'mtr', 'Medtr4g092690' => 'mtr', 'Medtr5g014710' => 'mtr', 'Medtr8g463760' => 'mtr', 'MELO3C000258.2' => 'cme', 'MELO3C007674.2' => 'cme', 'MELO3C016050.2' => 'cme', 'MELO3C016095.2' => 'cme', 'MELO3C017175.2' => 'cme', 'Migut.D01813' => 'egut', 'Migut.H00307' => 'egut', 'Migut.H01977' => 'egut', 'Migut.H01978' => 'egut', 'Migut.I00183' => 'egut', 'Migut.N01114' => 'egut', 'MSTRG.11382' => 'ama', 'MSTRG.12879' => 'ama', 'MSTRG.14954' => 'ama', 'MSTRG.16654' => 'ama', 'MSTRG.23019' => 'ama', 'MSTRG.23642' => 'ama', 'MSTRG.27779' => 'ama', 'MSTRG.9628' => 'ama', 'Nitab4.5_0000035g0050' => 'nta', 'Nitab4.5_0000036g0310' => 'nta', 'Nitab4.5_0000383g0300' => 'nta', 'Nitab4.5_0000451g0100' => 'nta', 'Nitab4.5_0000576g0090' => 'nta', 'Nitab4.5_0001128g0090' => 'nta', 'Nitab4.5_0001208g0020' => 'nta', 'Nitab4.5_0001477g0170' => 'nta', 'Nitab4.5_0004312g0010' => 'nta', 'Nitab4.5_0005440g0040' => 'nta', 'Nitab4.5_0005609g0040' => 'nta', 'Nitab4.5_0006000g0090' => 'nta', 'Nitab4.5_0009145g0010' => 'nta', 'Nn1g04356' => 'nnu', 'Nn1g09065' => 'nnu', 'Nn4g25036' => 'nnu', 'Nn5g29127' => 'nnu', 'Oeu005392.1' => 'oeu', 'Oeu005735.1' => 'oeu', 'Oeu008557.1' => 'oeu', 'Oeu008558.1' => 'oeu', 'Oeu012606.2' => 'oeu', 'Oeu022208.1' => 'oeu', 'Oeu031214.2' => 'oeu', 'Oeu047010.2' => 'oeu', 'Oeu059274.1' => 'oeu', 'Os01g0649100' => 'osa', 'Os01g0829800' => 'osa', 'Os03g0773800' => 'osa', 'Os05g0574400' => 'osa', 'Os07g0630800' => 'osa', 'Os08g0434300' => 'osa', 'Os12g0632700' => 'osa', 'Peaxi162Scf00069g02021' => 'pax', 'Peaxi162Scf00073g00197' => 'pax', 'Peaxi162Scf00152g00643' => 'pax', 'Peaxi162Scf00274g00052' => 'pax', 'Peaxi162Scf00299g00340' => 'pax', 'Peaxi162Scf00302g00113' => 'pax', 'Peaxi162Scf00302g00126' => 'pax', 'Peaxi162Scf00943g00215' => 'pax', 'Peaxi162Scf01503g00019' => 'pax', 'PGR031G0857' => 'pgr', 'PGR044G0764' => 'pgr', 'PGR083G0597' => 'pgr', 'PGR083G1354' => 'pgr', 'PGR102G2786' => 'pgr', 'PGSC0003DMG400005120' => 'stu', 'PGSC0003DMG400010386' => 'stu', 'PGSC0003DMG400011570' => 'stu', 'PGSC0003DMG400012395' => 'stu', 'PGSC0003DMG400015379' => 'stu', 'PGSC0003DMG400019511' => 'stu', 'PGSC0003DMG402025430' => 'stu', 'Phvul.002G216800' => 'pvu', 'Phvul.003G189700' => 'pvu', 'Phvul.011G159000' => 'pvu', 'Potri.001G287400' => 'ptr', 'Potri.001G376500' => 'ptr', 'Potri.004G054200' => 'ptr', 'Potri.004G112800' => 'ptr', 'Potri.007G009100' => 'ptr', 'Potri.009G081600' => 'ptr', 'Potri.011G096300' => 'ptr', 'Potri.017G101900' => 'ptr', 'Potri.017G102000' => 'ptr', 'Potri.017G152000' => 'ptr', 'Pp3c11_3740' => 'ppa', 'Pp3c12_8120' => 'ppa', 'Pp3c14_9020' => 'ppa', 'Pp3c17_6520' => 'ppa', 'Pp3c1_7380' => 'ppa', 'Pp3c20_3930' => 'ppa', 'Pp3c4_20940' => 'ppa', 'Pp3c8_19590' => 'ppa', 'PRCOL_00002817' => 'pco', 'PRCOL_00004249' => 'pco', 'PRCOL_00006787' => 'pco', 'Prupe.3G194400' => 'ppe', 'Prupe.4G058400' => 'ppe', 'Prupe.4G170500' => 'ppe', 'Prupe.5G194200' => 'ppe', 'Prupe.6G212400' => 'ppe', 'Prupe.8G157300' => 'ppe', 'Psat1g092720' => 'psa', 'Psat2g088320' => 'psa', 'Psat2g088400' => 'psa', 'Psat2g088480' => 'psa', 'Psat2g088520' => 'psa', 'Psat2g172840' => 'psa', 'Psat3g009480' => 'psa', 'Psat4g028680' => 'psa', 'Psat4g028720' => 'psa', 'Psat4g051000' => 'psa', 'Psat4g180720' => 'psa', 'Psat7g104200' => 'psa', 'PSO013G0085' => 'pso', 'PSO063G4507' => 'pso', 'PSO210G4074' => 'pso', 'PSO210G5246' => 'pso', 'PSO447G0170' => 'pso', 'PSO782G1666' => 'pso', 'PSO832G3464' => 'pso', 'QL06p037998' => 'qlo', 'QL08p026900' => 'qlo', 'QL10p017096' => 'qlo', 'QL11p027153' => 'qlo', 'RcHm_v2.0_Chr2g0109561' => 'rch', 'RcHm_v2.0_Chr5g0031491' => 'rch', 'RcHm_v2.0_Chr6g0246321' => 'rch', 'RcHm_v2.0_Chr7g0181501' => 'rch', 'Rhsim04G0024600' => 'rsi', 'Rhsim05G0214500' => 'rsi', 'Rhsim06G0205300' => 'rsi', 'Rhsim10G0084700' => 'rsi', 'Rhsim11G0145600' => 'rsi', 'Rhsim11G0145900' => 'rsi', 'Sabra04G0072100' => 'sbr', 'Sabra09G0063300' => 'sbr', 'Sabra11G0092600' => 'sbr', 'Sabra16G0247900' => 'sbr', 'Sabra17G0087600' => 'sbr', 'Sabra17G0087700' => 'sbr', 'Sabra17G0087900' => 'sbr', 'SalBow6G5884' => 'sbo', 'SalBow7G2087' => 'sbo', 'SalBow7G2468' => 'sbo', 'SalBow7G4777' => 'sbo', 'Sc03g0000660' => 'sci', 'Sc03g0010380' => 'sci', 'Sc11g0007110' => 'sci', 'Sc16g0007440' => 'sci', 'Sed0003482' => 'sed', 'Sed0011466' => 'sed', 'Sed0017885' => 'sed', 'Sed0022258' => 'sed', 'Sed0023806' => 'sed', 'SEGI_02445' => 'sgi', 'SEGI_09629' => 'sgi', 'SEGI_11860' => 'sgi', 'SEGI_19605' => 'sgi', 'SEGI_28749' => 'sgi', 'SGA_v2.0_scaffold121G33093' => 'sas', 'SGA_v2.0_scaffold130G34317' => 'sas', 'SGA_v2.0_scaffold201G41399' => 'sas', 'SGA_v2.0_scaffold25G10915' => 'sas', 'SGA_v2.0_scaffold337G49171' => 'sas', 'SHI12072' => 'shi', 'SHI24193' => 'shi', 'SMO117G0319' => 'smo', 'SMO118G0377' => 'smo', 'SMO119G0251' => 'smo', 'SMO259G0017' => 'smo', 'Solyc01g106480.4' => 'sly', 'Solyc02g063490.3' => 'sly', 'Solyc03g115990.3' => 'sly', 'Solyc07g062650.4' => 'sly', 'Solyc09g091070.3' => 'sly', 'Solyc12g014180.2' => 'sly', 'Sopen01g048850' => 'spe', 'Sopen02g014570' => 'spe', 'Sopen03g034980' => 'spe', 'Sopen07g030880' => 'spe', 'Sopen09g034050' => 'spe', 'Sopen12g005970' => 'spe', 'Sp1g39810' => 'spa', 'Sp3g13220' => 'spa', 'Sp4g01770' => 'spa', 'Sp5g14360' => 'spa', 'Sp6g33720' => 'spa', 'TAR374G1511' => 'tar', 'TAR381G0171' => 'tar', 'TAR381G1148' => 'tar', 'TAR622G1224' => 'tar', 'TAR624G0878' => 'tar', 'TAR625G1500' => 'tar', 'TAR626G0343' => 'tar', 'TAR628G0418' => 'tar', 'TAR628G1438' => 'tar', 'TAR629G1834' => 'tar', 'THA.LOC104798756' => 'tha', 'THA.LOC104799628' => 'tha', 'THA.LOC104804850' => 'tha', 'THA.LOC104807857' => 'tha', 'THA.LOC104815567' => 'tha', 'THA.LOC104818455' => 'tha', 'THA.LOC104821420' => 'tha', 'Thecc.01G080800' => 'tca', 'Thecc.02G035100' => 'tca', 'Thecc.03G089000' => 'tca', 'Thecc.06G174300' => 'tca', 'Thecc.07G104800' => 'tca', 'Thhalv10000218m.g' => 'esa', 'Thhalv10010432m.g' => 'esa', 'Thhalv10011552m.g' => 'esa', 'Thhalv10013748m.g' => 'esa', 'TPR.G16892' => 'tpr', 'TPR.G22541' => 'tpr', 'TPR.G28860' => 'tpr', 'TPR.G9254' => 'tpr', 'TWI15G0238' => 'twi', 'TWI38G1905' => 'twi', 'TWI39G0631' => 'twi', 'TWI53G1844' => 'twi', 'TWI59G1438' => 'twi', 'TWI60G0622' => 'twi', 'unitig_0.g2272' => 'ugi', 'unitig_0.g490' => 'ugi', 'unitig_52.g17396' => 'ugi', 'unitig_52.g17422' => 'ugi', 'unitig_52.g17423' => 'ugi', 'unitig_578.g16261' => 'ugi', 'unitig_60.g25420' => 'ugi', 'unitig_60.g25421' => 'ugi', 'unitig_749.g13534' => 'ugi', 'vmacro01913' => 'vma', 'vmacro05432' => 'vma', 'vmacro09502' => 'vma', 'vmacro11910' => 'vma', 'vmacro11911' => 'vma', 'VMungo1127G2118' => 'vmu', 'Zm00001eb041400' => 'zma', 'Zm00001eb059070' => 'zma', 'Zm00001eb134330' => 'zma', 'Zm00001eb158270' => 'zma', 'Zm00001eb179730' => 'zma', 'Zm00001eb296550' => 'zma', 'Zm00001eb328310' => 'zma', 'Zm00001eb344340' => 'zma' ) $gf_id = 'HOM05D000878' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000878' ) $data_identifier = 'HOM05D000878' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 5, 'aag' => (int) 3, 'ach' => (int) 12, 'amhyb' => (int) 10, 'aly' => (int) 5, 'aox' => (int) 4, 'arhy' => (int) 11, 'ath' => (int) 6, 'atr' => (int) 4, 'acertr' => (int) 3, 'cqu' => (int) 9, 'bca' => (int) 22, 'bol' => (int) 12, 'bra' => (int) 9, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 7, 'cde' => (int) 6, 'cfa' => (int) 6, 'ccl' => (int) 5, 'cil' => (int) 5, 'cla' => (int) 3, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 6, 'camsi' => (int) 19, 'dca' => (int) 6, 'din' => (int) 10, 'dzi' => (int) 7, 'eca' => (int) 6, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 15, 'fve' => (int) 5, 'gma' => (int) 8, 'ghi' => (int) 17, 'gra' => (int) 8, 'vvi' => (int) 6, 'han' => (int) 10, 'cav' => (int) 4, 'hma' => (int) 8, 'vpl' => (int) 7, 'sun' => (int) 5, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 5, 'mes' => (int) 7, 'mpo' => (int) 3, 'mbi' => (int) 8, 'mco' => (int) 3, 'mdo' => (int) 10, 'mtr' => (int) 6, 'cme' => (int) 5, 'egut' => (int) 6, 'ama' => (int) 8, 'nta' => (int) 13, 'nnu' => (int) 4, 'oeu' => (int) 9, 'osa' => (int) 7, 'pax' => (int) 9, 'pgr' => (int) 5, 'stu' => (int) 7, 'pvu' => (int) 3, 'ptr' => (int) 10, 'ppa' => (int) 8, 'pco' => (int) 3, 'ppe' => (int) 6, 'psa' => (int) 12, 'pso' => (int) 7, 'qlo' => (int) 4, 'rch' => (int) 4, 'rsi' => (int) 6, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 5, 'sas' => (int) 5, 'shi' => (int) 2, 'smo' => (int) 4, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 10, 'tha' => (int) 7, 'tca' => (int) 5, 'esa' => (int) 4, 'tpr' => (int) 4, 'twi' => (int) 6, 'ugi' => (int) 9, 'vma' => (int) 5, 'vmu' => (int) 1, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb344340' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1